usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 18.3562 17.7471 18.8583 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1333 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 721 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 710 Number of spheres polar: 138, nonpolar: 339, out of current total: 710 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.39284 28.14834 7.75159 27.73720 8.90686 28.12061 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 443 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 389 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 374 Spheres center of coords (x y z): 18.5084537700535 16.9850284491979 18.1639213368984 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.0141868475507 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 30