usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 14.6371 33.7234 32.3061666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1931 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 894 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 894 Number of spheres polar: 302, nonpolar: 463, out of current total: 894 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.63950 22.56338 23.73216 43.60851 22.31746 42.24545 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 293 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 234 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 210 Spheres center of coords (x y z): 14.5234275714286 35.5854767619048 29.0966472380952 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.80610407460736 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 30