usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 14.6371 33.7234 32.3061666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1931 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 894 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 894 Number of spheres polar: 302, nonpolar: 463, out of current total: 894 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.63950 22.56338 23.73216 43.60851 22.31746 42.24545 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 466 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 397 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 363 Spheres center of coords (x y z): 14.4667473553719 35.6406289531681 29.5369320936639 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.56340323148348 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 30