usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 15.0173333333333 33.5264814814815 31.9301481481482 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1783 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 767 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 767 Number of spheres polar: 250, nonpolar: 388, out of current total: 767 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.02127 24.93125 23.54384 43.52633 21.94378 41.91033 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 265 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 221 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 193 Spheres center of coords (x y z): 14.6487855958549 34.5583120207254 27.354604611399 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.12416002752396 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 27