name of input pdb file: rec.crg name of output contact grid file: solvmap_sev atomic radii (A): 1. for O N C S P Other [1.4 1.3 1.7 2.22.2 1.8]? 1.600000 1.650000 1.900000 1.900000 1.900000 1.600000 2. for water probe (exclusion) [1.4]? 1.400000 number of grid points/angstrom?(1-4) 2 pdb file of limiting box: box assumed ligand atomic radius (A): 1.400000 maximum receptor atomic radius (A): 1.900000 grid resolution (A): 0.5000000 integration cutoff (A): 10.00000 receptor minimum and maximum x y z (A): -19.45500 -8.5000001E-02 8.823000 41.36100 61.43400 53.07100 box minimum and maximum x y z (A): -6.379000 11.68000 19.86200 35.08400 56.06200 51.09700 dielectric grid expansion size (points/edge) 20 20 20 19 17 11 dielectric grid minimum and maximum x y z (A): -16.37900 1.680000 9.862000 44.58400 64.56200 56.59700 solvation grid x, y, z dimensions: 82 88 62 finished receptor accessible surface finished initializing dielectric grid finished creating receptor molecular surface grid dV is 9.9471835E-03 Precalculating solvmap lookup table Starting solvmap calculation. 1 / 63 the way there! 2 / 63 the way there! 3 / 63 the way there! 4 / 63 the way there! 5 / 63 the way there! 6 / 63 the way there! 7 / 63 the way there! 8 / 63 the way there! 9 / 63 the way there! 10 / 63 the way there! 11 / 63 the way there! 12 / 63 the way there! 13 / 63 the way there! 14 / 63 the way there! 15 / 63 the way there! 16 / 63 the way there! 17 / 63 the way there! 18 / 63 the way there! 19 / 63 the way there! 20 / 63 the way there! 21 / 63 the way there! 22 / 63 the way there! 23 / 63 the way there! 24 / 63 the way there! 25 / 63 the way there! 26 / 63 the way there! 27 / 63 the way there! 28 / 63 the way there! 29 / 63 the way there! 30 / 63 the way there! 31 / 63 the way there! 32 / 63 the way there! 33 / 63 the way there! 34 / 63 the way there! 35 / 63 the way there! 36 / 63 the way there! 37 / 63 the way there! 38 / 63 the way there! 39 / 63 the way there! 40 / 63 the way there! 41 / 63 the way there! 42 / 63 the way there! 43 / 63 the way there! 44 / 63 the way there! 45 / 63 the way there! 46 / 63 the way there! 47 / 63 the way there! 48 / 63 the way there! 49 / 63 the way there! 50 / 63 the way there! 51 / 63 the way there! 52 / 63 the way there! 53 / 63 the way there! 54 / 63 the way there! 55 / 63 the way there! 56 / 63 the way there! 57 / 63 the way there! 58 / 63 the way there! 59 / 63 the way there! 60 / 63 the way there! 61 / 63 the way there! 62 / 63 the way there! 63 / 63 the way there! successful completion elapsed time (sec): 1795.7100 Tue Oct 11 08:36:44 PDT 2011 rec.crg solvmap_sev 1.60,1.65,1.90,1.90,1.90,1.60 1.4 2 box 1.4 EOI # receptor file # output grid file # radii of oxygen, nitrogen, carbon, sulfur, phosphorus, and "other" atoms. # radius of probe # grid resolution # box file # born radius of ligand atom