usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 14.4633103448276 33.3931379310345 32.1802068965517 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1510 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 808 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 808 Number of spheres polar: 277, nonpolar: 416, out of current total: 808 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.46579 23.82909 23.44573 43.39046 22.19097 42.12516 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 450 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 375 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 331 Spheres center of coords (x y z): 14.2237133534743 34.8930642296073 28.5242467975831 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.40343420608674 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 29