usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 37.8524333333333 34.6249666666667 12.5218666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1681 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 849 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 849 Number of spheres polar: 232, nonpolar: 460, out of current total: 849 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 28.33238 47.80467 24.63311 44.60854 2.61056 22.46536 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 290 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 231 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 206 Spheres center of coords (x y z): 38.0395631067961 35.8787886893204 16.8562134466019 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.81765445945357 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 30