usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 38.0605 34.6332857142857 12.7407857142857
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2055
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 919
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 919
Number of spheres polar: 313, nonpolar: 458, out of current total: 919
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 28.07018 48.05436 24.71404 44.62506 2.79646 22.73420
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 485
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 405
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 355
Spheres center of coords (x y z): 38.4602949014084 36.170946112676 16.7705637746479
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.83353708131912
Final number of output spheres is: 60
Number of polar spheres: 22
Number of nonpolar spheres: 38
Number of spheres that are near neither polar nor nonpolar receptor atoms: 0
Final number of spheres that are from crystallographic ligand: 28