Distance from surface specified: 1.80 There are 30 ligand heavy atoms Ligand center of coords (x y z): 38.2030666666667 35.4661 12.0866666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 18527 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 13754 WARNING: removing a crystallographic sphere that is distance 1.90546713432691 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 13466 Number of spheres polar: 7886, nonpolar: 4302, out of current total: 13466 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.23060 52.19940 21.47760 49.46540 -1.90180 26.07480 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1654 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 789 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 714 Spheres center of coords (x y z): 38.4807182072829 37.1253327731092 12.6604327731092 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.0331067087267 Final number of output spheres is: 200 Number of polar spheres: 110 Number of nonpolar spheres: 84 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 29