There are 30 ligand heavy atoms Ligand center of coords (x y z): 38.2030666666667 35.4661 12.0866666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 18527 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 10304 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 10304 Number of spheres polar: 6088, nonpolar: 3231, out of current total: 10304 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 26.21940 50.19200 23.46900 47.46160 0.08700 24.05920 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1289 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 541 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 495 Spheres center of coords (x y z): 39.2778614141414 36.5275418181818 15.420877979798 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.338564391013 Final number of output spheres is: 120 Number of polar spheres: 46 Number of nonpolar spheres: 69 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 30