usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 4.0614 54.40748 26.38836
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1365
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 934
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 934
Number of spheres polar: 244, nonpolar: 537, out of current total: 934
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -5.86894 14.05152 45.02882 64.24912 16.47264 36.37365
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 494
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 422
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 376
Spheres center of coords (x y z): 2.12326941489362 53.1363127393617 24.224251143617
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.08192463301248
Final number of output spheres is: 60
Number of polar spheres: 14
Number of nonpolar spheres: 46
Number of spheres that are near neither polar nor nonpolar receptor atoms: 0
Final number of spheres that are from crystallographic ligand: 25