usefragsph not on
There are 30 ligand heavy atoms
Ligand center of coords (x y z): 3.60783333333333 53.7093 25.8268666666667
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1369
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 864
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 863
Number of spheres polar: 247, nonpolar: 411, out of current total: 863
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.35300 13.49436 43.74273 63.61966 15.97097 35.82568
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 468
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 407
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 381
Spheres center of coords (x y z): 1.53854682414698 52.4919999737532 24.7306410498688
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.58528401237175
Final number of output spheres is: 60
Number of polar spheres: 16
Number of nonpolar spheres: 42
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 30