usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 4.29888235294118 54.0800294117647 24.4682352941176 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1354 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 769 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 769 Number of spheres polar: 189, nonpolar: 391, out of current total: 769 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -5.52399 14.29327 44.14918 64.06161 14.47490 34.44006 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 279 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 240 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 203 Spheres center of coords (x y z): 2.20885108374384 51.8027815270936 22.4118446305419 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.60817443713393 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 34