usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 107.977472222222 97.5497222222222 58.9738888888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 756 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 411 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 406 Number of spheres polar: 104, nonpolar: 172, out of current total: 406 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 97.98000 117.68788 87.93991 103.50100 49.19361 68.82598 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 253 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 233 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 207 Spheres center of coords (x y z): 107.989806135266 96.7619033816425 60.122288647343 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.23169775653636 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 36