usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): -10.3779166666667 -45.7516111111111 -18.4158333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 778 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 404 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 404 Number of spheres polar: 139, nonpolar: 145, out of current total: 404 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -20.27436 -4.91694 -55.59900 -35.76784 -28.40466 -8.66265 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 258 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 232 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 190 Spheres center of coords (x y z): -10.5925454736842 -46.6247549473684 -17.6130066842105 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.98066598882692 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 36