usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 33.4565405405405 -5.5347027027027 12.5052162162162 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 592 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 399 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 398 Number of spheres polar: 132, nonpolar: 147, out of current total: 398 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.80235 40.75867 -15.29044 2.53259 2.63452 22.26732 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 252 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 223 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 208 Spheres center of coords (x y z): 33.0886492788461 -5.52234326923077 11.8620439903846 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.96568051757729 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 37