Distance from surface specified: 1.80 There are 37 ligand heavy atoms Ligand center of coords (x y z): 9.37894594594595 11.7009459459459 -21.9868378378378 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 8243 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 6451 WARNING: removing a crystallographic sphere that is distance 8.07861101922849 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 7.58633620399202 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 1.87719365010646 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 6316 Number of spheres polar: 3587, nonpolar: 2050, out of current total: 6316 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.57760 23.36280 1.07840 25.70080 -27.70120 -7.99200 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 979 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 633 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 611 Spheres center of coords (x y z): 9.2663728314239 13.2038697217676 -19.5067852700491 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 9.37555508744427 Final number of output spheres is: 200 Number of polar spheres: 92 Number of nonpolar spheres: 87 Number of spheres that are near neither polar nor nonpolar receptor atoms: 21 Final number of spheres that are from crystallographic ligand: 34