DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-4-20.c.bkslab.org 10-Apr-12 19:35:38 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../../lig/db.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1649808 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -16.54000 -1.193001 -30.89100 grid max 26.96000 35.80700 4.109000 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 30 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.23739 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 9JZ_1_3HL 3646 3907024 37 11891 2956.1 11.08 E 9JZ_1_3HL 3 -40.60 -28.43 21.90 -1.73 -48.86 2 9JZ_1_3HL 1566 2172016 37 2070 1056.4 5.92 E 9JZ_1_3HL 3 -37.55 -20.81 19.39 -1.31 -40.28 3 9JZ_1_3HL 1743 2177757 37 161 1461.4 7.24 E 9JZ_1_3HL 2 -1.41 -23.45 3.37 -2.27 -23.77 4 9JZ_1_3HL 2824 3306784 37 1623 2342.3 9.86 E 9JZ_1_3HL 2 -38.32 -23.11 20.39 -1.21 -42.25 5 9JZ_1_3HL 2924 2402438 37 7632 1782.3 7.93 E 9JZ_1_3HL 3 -40.82 -26.02 22.40 -1.94 -46.38 6 9JZ_1_3HL 1566 1534511 37 1284 126.1 4.86 E 9JZ_1_3HL 3 -27.19 -13.54 16.26 -0.78 -25.25 7 9JZ_1_3HL 1743 2402081 37 120 1886.7 7.19 E 9JZ_1_3HL 2 -2.41 -25.60 4.45 -2.68 -26.24 8 9JZ_1_3HL 2817 3057511 37 1141 1598.6 9.16 E 9JZ_1_3HL 2 -36.83 -19.91 19.81 -1.00 -37.92 9 9JZ_1_3HL 3026 2805656 37 5775 2554.0 9.41 E 9JZ_1_3HL 3 -39.25 -26.29 22.25 -2.04 -45.33 10 9JZ_1_3HL 1566 1756953 37 1210 1082.0 5.30 E 9JZ_1_3HL 3 -38.00 -22.72 19.40 -1.31 -42.63 11 9JZ_1_3HL 1743 2217959 37 108 1485.4 7.24 E 9JZ_1_3HL 2 -1.72 -23.84 2.10 -2.65 -26.10 12 9JZ_1_3HL 2823 3302610 37 889 1679.4 9.73 E 9JZ_1_3HL 2 -37.89 -23.11 19.73 -1.27 -42.56 13 9JZ_1_3HL 5487 4592663 37 7260 2320.0 17.33 E 9JZ_1_3HL 3 -38.96 -27.77 21.20 -1.54 -47.06 14 9JZ_1_3HL 1566 1694873 37 1878 552.6 5.27 E 9JZ_1_3HL 3 -25.28 -22.56 18.45 -1.69 -31.08 15 9JZ_1_3HL 1742 2165122 37 177 1978.4 7.40 E 9JZ_1_3HL 2 -26.78 -18.58 19.81 -1.30 -26.84 16 9JZ_1_3HL 2814 3436731 37 1275 2924.0 10.38 E 9JZ_1_3HL 2 -38.83 -28.26 21.29 -1.66 -47.46 EOF: ../../lig/db.db.gz end of file encountered total minimization steps = 1890384 for debugging, time = 137.4000 solvation corrected scores: (a) 1 9JZ_1_3HL score: -48.858 nathvy = 37 nconfs = 11891 2 9JZ_1_3HL score: -47.457 nathvy = 37 nconfs = 1275 3 9JZ_1_3HL score: -47.060 nathvy = 37 nconfs = 7260 4 9JZ_1_3HL score: -46.381 nathvy = 37 nconfs = 7632 5 9JZ_1_3HL score: -45.333 nathvy = 37 nconfs = 5775 6 9JZ_1_3HL score: -42.633 nathvy = 37 nconfs = 1210 7 9JZ_1_3HL score: -42.556 nathvy = 37 nconfs = 889 8 9JZ_1_3HL score: -42.250 nathvy = 37 nconfs = 1623 9 9JZ_1_3HL score: -40.277 nathvy = 37 nconfs = 2070 10 9JZ_1_3HL score: -37.920 nathvy = 37 nconfs = 1141 11 9JZ_1_3HL score: -31.083 nathvy = 37 nconfs = 1878 12 9JZ_1_3HL score: -26.843 nathvy = 37 nconfs = 177 13 9JZ_1_3HL score: -26.237 nathvy = 37 nconfs = 120 14 9JZ_1_3HL score: -26.101 nathvy = 37 nconfs = 108 15 9JZ_1_3HL score: -25.246 nathvy = 37 nconfs = 1284 16 9JZ_1_3HL score: -23.768 nathvy = 37 nconfs = 161 Date and Time: 10-Apr-12 19:38:00 elapsed time (sec): 137.4400