usefragsph not on
There are 31 ligand heavy atoms
Ligand center of coords (x y z): 3.93567741935484 24.7775161290323 17.2002580645161
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1880
FINISHED READING IN FILE sph/sph CLUSTER 0
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1000
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1000
Number of spheres polar: 155, nonpolar: 702, out of current total: 1000
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.04750 12.58983 14.78920 34.22959 7.24600 27.19941
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 298
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 249
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 228
Spheres center of coords (x y z): 4.0490747368421 21.3785030263158 16.5194971929825
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.89964019990799
Final number of output spheres is: 45
Number of polar spheres: 11
Number of nonpolar spheres: 32
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 31